PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g18900.3
Common NameLR48_Vigan07g269300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 132aa    MW: 14901.8 Da    PI: 9.4864
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g18900.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.2e-18352255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Vang01g18900.3  3 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 52
                    69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.8E-37366IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-21361IPR016177DNA-binding domain
PROSITE profilePS5103222.128360IPR001471AP2/ERF domain
PfamPF008477.2E-11452IPR001471AP2/ERF domain
CDDcd000187.21E-28462No hitNo description
PRINTSPR003675.5E-12415IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-30461IPR001471AP2/ERF domain
PRINTSPR003675.5E-124262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MKPYRGIRMR KWGKWVAEIR EPNKRSRIWL GSYTTPVAAA RAYDTAVFYL RGPSARLNFP  60
ELLFQDEVDG ANDDDSVNMS ADSIRRKATQ VGARVDALQT ALHHHAPSHN PTLISLKPDL  120
NEFPKLEDLQ D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-15260463ATERF1
3gcc_A1e-15260463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503733.14e-94PREDICTED: ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC304e-51RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A0L9V2Q56e-95A0A0L9V2Q5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RQD16e-95A0A0S3RQD1_PHAAN; Uncharacterized protein
STRINGGLYMA14G09320.13e-76(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.12e-52related to AP2 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]